Dictionary v0.9a
June., 2014. Release 17
MIGRATING VALIDATED RELEASE 16 DATA TO RELEASE 17
Since changes to dictionary are minimal in this Release, DCC has made available migration scripts to help you convert your validated Release 16 submission files to Release 17. The scripts will perform the folllowing:
- Removes columns no longer required
- Performs the specimen_type mapping between old specimen_type terms and the new specimen_type terms. (Note: Perl script added for Perl users)
Download the script package from here or at GitHub . For more details, please review the README file in the package before executing.
Changes to Specifications Since Version 0.8d (March., 2014)
Revisions to Data Elements: Changes
Specimen Data File (specimen)
Data Element ID | Comment |
---|---|
specimen_type |
|
specimen_type_other | New MVEL script restriction. If specimen_type is either "Normal - other", "Primary tumour - other" or "Recurrent tumour - other", then specimen_type_other field must be filled in |
Analyzed Sample Data File (sample)
Data Element ID | Comment |
---|---|
analyzed_sample_type | Removed |
analyzed_sample_type_other | Removed |
All Data Type Files
Data Element ID | Comment |
---|---|
note | Removed |
raw_data_accession |
|
Copy Number - Metadata file (cnsm_m)
Data Element ID | Comment |
---|---|
sequencing_strategy |
|
- New more comprehensive specimen types.
- In line with PanCancer tumour/normal designations