Dictionary v0.8d
Mar., 2014. Release 16
NEW: Our new Dictionary Comparison Tool highlights differences between different dictionary versions. Please try it out here
March 31th 2014
Change between 0.8c and 0.8d:
- Modified MVEL script restriction for "mutated_to_allele" in SSM Primary data file specification to handle homozygous -> heterozygous mutations.
March 19th 2014
Change between 0.8b and 0.8c:
- Changed "total_read_count" in exp_seq_m and mirna_seq_m to accept N/A reserve codes. Also added a link to WHO International Histological Classification of Tumours for the "tumour_histological_type" field in specimen data specification
March 11th 2014
Change between 0.8a and 0.8b:
- Added a MVEL script restriction for "mutated_to_allele" field in Simple Somatic Mutations Primary File (ssm_p). See example here
Changes to Specifications Since Version 0.7e (Jan., 2014)
Improvements:
- Incremental submission is now supported, please see here for more information
- Selective validation is now supported, please see here for more information
- Array-based submission formats have been heavily revised to improve compactness and reduce file sizes. These include:
- Sequencing-based DNA Methylation (meth_seq_m and meth_seq_p )
- Array-based DNA Methylation (meth_array_m and meth_array_p )
- Sequencing-based Gene Expression (exp_seq_m and exp_seq_p )
- Array-based Gene Expression (exp_array_m and exp_array_p )
- Sequencing-based miRNA Expression (mirna_seq_m and mirna_seq_p )
NOTE: For Array-based methylation data, probe IDs will be cross-referenced against array manifest files. If your array manifest file is not included in the list, please contact DCC.
- Please see our dictionary diff tool here for more information
Revisions to Data Elements: Additions
Analyzed Sample Data File (sample)
Data Element ID | Comment |
---|---|
study |
|
Revisions to Data Elements: Changes
Copy Number Somatic Mutations (cnsm) - Primary Analysis File (p):
Data Element ID | Comment |
---|---|
biological_validation_status | changed to accept N/A reserve code -888 |
Simple Somatic Mutations (ssm) - Primary Analysis File (p):
Data Element ID | Comment |
---|---|
biological_validation_status | changed to accept N/A reserve code -888 |